infrastructure-overview

Category: Tools & Productivity | Uploader: docxologydocxology | Downloads: 0 | Version: v1.0(Latest)

Top-level skill for the research template infrastructure layer. Use in Cursor, Claude Code, or similar agents when editing or importing anything under infrastructure/, understanding the two-layer architecture, or wiring build/validation/rendering/publishing. Covers module discovery, import patterns, thin orchestrators, per-subpackage SKILL.md paths, and .cursor/skill_manifest.json (see infrastructure.skills).

Changelog: Source: GitHub https://github.com/docxology/template

Directory Structure

Current level: tree/main/infrastructure/

  • 📁 config/
    • 📄 .env.template 605 B
    • 📄 AGENTS.md 684 B
    • 📄 README.md 401 B
    • 📄 secure_config.yaml 4.5 KB
    • 📄 SKILL.md 1.1 KB
  • 📁 core/
    • 📁 config/
      • 📄 __init__.py 607 B
      • 📄 AGENTS.md 529 B
      • 📄 cli.py 2.6 KB
      • 📄 formatting.py 1.5 KB
      • 📄 loader.py 6.2 KB
      • 📄 queries.py 6.8 KB
      • 📄 README.md 298 B
      • 📄 schema.py 3.0 KB
    • 📁 files/
      • 📄 __init__.py 654 B
      • 📄 AGENTS.md 633 B
      • 📄 cleanup.py 5.0 KB
      • 📄 cleanup_helpers.py 4.1 KB
      • 📄 cleanup_root.py 3.5 KB
      • 📄 coverage_cleanup.py 3.3 KB
      • 📄 inventory.py 6.8 KB
      • 📄 inventory_entry.py 1.1 KB
      • 📄 inventory_reports.py 5.3 KB
      • 📄 operations.py 8.2 KB
      • 📄 README.md 374 B
    • 📁 logging/
      • 📄 __init__.py 1.4 KB
      • 📄 AGENTS.md 613 B
      • 📄 constants.py 1.2 KB
      • 📄 diagnostic.py 7.8 KB
      • 📄 formatters.py 2.1 KB
      • 📄 helpers.py 1.4 KB
      • 📄 pipeline_logging.py 7.1 KB
      • 📄 progress.py 9.3 KB
      • 📄 README.md 336 B
      • 📄 setup.py 6.2 KB
      • 📄 utils.py 3.7 KB
    • 📁 pipeline/
      • 📄 __init__.py 1.2 KB
      • 📄 _monitor_types.py 2.2 KB
      • 📄 _performance_monitor.py 5.2 KB
      • 📄 _stage_tracker.py 6.2 KB
      • 📄 AGENTS.md 923 B
      • 📄 dag.py 9.9 KB
      • 📄 executor.py 12.7 KB
      • 📄 multi_project.py 10.4 KB
      • 📄 pipeline.yaml 2.5 KB
      • 📄 README.md 485 B
      • 📄 resume.py 6.5 KB
      • 📄 stage_monitor.py 1.2 KB
      • 📄 stages.py 8.1 KB
      • 📄 summary.py 5.1 KB
      • 📄 summary_formatters.py 9.5 KB
      • 📄 summary_helpers.py 4.1 KB
      • 📄 summary_models.py 1021 B
      • 📄 types.py 2.7 KB
    • 📁 runtime/
      • 📄 __init__.py 1.1 KB
      • 📄 _directories.py 4.9 KB
      • 📄 _packages.py 3.9 KB
      • 📄 _python_env.py 5.1 KB
      • 📄 AGENTS.md 717 B
      • 📄 checkpoint.py 9.6 KB
      • 📄 env_deps.py 5.6 KB
      • 📄 environment.py 1.3 KB
      • 📄 eta.py 3.3 KB
      • 📄 function_profiler.py 8.5 KB
      • 📄 health_check.py 10.1 KB
      • 📄 README.md 380 B
      • 📄 retry.py 7.6 KB
    • 📁 telemetry/
      • 📄 __init__.py 1.1 KB
      • 📄 AGENTS.md 2.1 KB
      • 📄 collector.py 15.1 KB
      • 📄 config.py 2.3 KB
      • 📄 models.py 4.5 KB
      • 📄 README.md 1.2 KB
      • 📄 SKILL.md 2.0 KB
    • 📄 __init__.py 2.0 KB
    • 📄 _exceptions_core.py 7.7 KB
    • 📄 _exceptions_domains.py 2.8 KB
    • 📄 _optional_deps.py 618 B
    • 📄 _rate_limiting.py 6.9 KB
    • 📄 _validation.py 5.0 KB
    • 📄 AGENTS.md 98.2 KB
    • 📄 cli.py 1.8 KB
    • 📄 cli_handlers.py 8.1 KB
    • 📄 cli_parser.py 2.9 KB
    • 📄 credentials.py 6.0 KB
    • 📄 errors.py 6.5 KB
    • 📄 exceptions.py 2.9 KB
    • 📄 install_commands.py 1.4 KB
    • 📄 menu.py 2.0 KB
    • 📄 progress.py 11.8 KB
    • 📄 README.md 15.6 KB
    • 📄 script_discovery.py 5.6 KB
    • 📄 security.py 3.2 KB
    • 📄 SKILL.md 5.0 KB
  • 📁 docker/
    • 📄 AGENTS.md 400 B
    • 📄 docker-compose.yml 1.2 KB
    • 📄 Dockerfile 1.5 KB
    • 📄 README.md 161 B
    • 📄 SKILL.md 1.2 KB
  • 📁 documentation/
    • 📄 __init__.py 875 B
    • 📄 AGENTS.md 14.4 KB
    • 📄 figure_manager.py 9.2 KB
    • 📄 generate_glossary_cli.py 2.8 KB
    • 📄 glossary_gen.py 4.3 KB
    • 📄 image_manager.py 7.7 KB
    • 📄 markdown_integration.py 7.6 KB
    • 📄 README.md 19.4 KB
    • 📄 SKILL.md 2.1 KB
  • 📁 llm/
    • 📁 cli/
      • 📄 __init__.py 151 B
      • 📄 AGENTS.md 1.8 KB
      • 📄 main.py 8.5 KB
      • 📄 README.md 2.5 KB
    • 📁 core/
      • 📄 __init__.py 736 B
      • 📄 _connection.py 11.5 KB
      • 📄 _prompt_availability.py 754 B
      • 📄 _stream_helpers.py 2.6 KB
      • 📄 _stream_impl.py 11.8 KB
      • 📄 _structured_queries.py 12.3 KB
      • 📄 _text_utils.py 1.1 KB
      • 📄 AGENTS.md 15.0 KB
      • 📄 client.py 14.3 KB
      • 📄 config.py 10.6 KB
      • 📄 context.py 9.8 KB
      • 📄 log_preview.py 434 B
      • 📄 README.md 4.5 KB
      • 📄 response_saver.py 4.8 KB
      • 📄 sanitization.py 6.5 KB
    • 📁 prompts/
      • 📁 compositions/
        • 📄 AGENTS.md 17.7 KB
        • 📄 README.md 4.0 KB
        • 📄 retry_prompts.json 1.1 KB
      • 📁 fragments/
        • 📄 AGENTS.md 16.8 KB
        • 📄 content_requirements.json 1.1 KB
        • 📄 format_requirements.json 308 B
        • 📄 README.md 4.2 KB
        • 📄 section_structures.json 4.8 KB
        • 📄 system_prompts.json 1.3 KB
        • 📄 token_budget_awareness.json 457 B
        • 📄 validation_hints.json 403 B
      • 📁 templates/
        • 📄 AGENTS.md 18.5 KB
        • 📄 manuscript_reviews.json 5.7 KB
        • 📄 paper_summarization.json 2.9 KB
        • 📄 README.md 5.2 KB
      • 📄 __init__.py 447 B
      • 📄 _fragment_builders.py 8.7 KB
      • 📄 AGENTS.md 20.8 KB
      • 📄 composer.py 6.8 KB
      • 📄 loader.py 7.0 KB
      • 📄 README.md 4.1 KB
    • 📁 review/
      • 📄 __init__.py 1.5 KB
      • 📄 AGENTS.md 20.1 KB
      • 📄 formatting.py 8.0 KB
      • 📄 generation.py 13.8 KB
      • 📄 generator.py 4.9 KB
      • 📄 io.py 1.2 KB
      • 📄 metrics.py 2.0 KB
      • 📄 ollama_setup.py 8.8 KB
      • 📄 pipeline_runner.py 7.2 KB
      • 📄 quality.py 8.8 KB
      • 📄 README.md 3.9 KB
      • 📄 review_analysis.py 4.2 KB
      • 📄 saving.py 9.5 KB
    • 📁 templates/
      • 📄 __init__.py 3.2 KB
      • 📄 AGENTS.md 21.2 KB
      • 📄 base.py 692 B
      • 📄 helpers.py 6.0 KB
      • 📄 literature_analysis.py 5.1 KB
      • 📄 manuscript.py 1.7 KB
      • 📄 manuscript_reviews.py 10.2 KB
      • 📄 manuscript_suggestions.py 8.7 KB
      • 📄 manuscript_translation.py 5.7 KB
      • 📄 paper_summarization.py 16.5 KB
      • 📄 README.md 4.7 KB
      • 📄 research.py 2.4 KB
    • 📁 utils/
      • 📄 __init__.py 932 B
      • 📄 AGENTS.md 3.6 KB
      • 📄 heartbeat.py 9.2 KB
      • 📄 models.py 14.6 KB
      • 📄 ollama.py 1.8 KB
      • 📄 README.md 4.9 KB
      • 📄 server.py 8.0 KB
    • 📁 validation/
      • 📄 __init__.py 1.7 KB
      • 📄 AGENTS.md 24.3 KB
      • 📄 core.py 9.8 KB
      • 📄 detection.py 12.1 KB
      • 📄 format.py 6.2 KB
      • 📄 README.md 6.3 KB
      • 📄 repetition.py 635 B
      • 📄 similarity.py 3.9 KB
      • 📄 structure.py 4.7 KB
    • 📄 __init__.py 1.3 KB
    • 📄 AGENTS.md 2.4 KB
    • 📄 README.md 5.5 KB
    • 📄 SKILL.md 4.4 KB
  • 📁 project/
    • 📁 manuscript/
      • 📄 98_symbols_glossary.md 189 B
      • 📄 AGENTS.md 1.2 KB
      • 📄 README.md 1.1 KB
    • 📄 __init__.py 688 B
    • 📄 AGENTS.md 10.6 KB
    • 📄 discovery.py 5.8 KB
    • 📄 metadata.py 3.3 KB
    • 📄 project_info.py 2.6 KB
    • 📄 README.md 6.3 KB
    • 📄 SKILL.md 2.8 KB
    • 📄 validation.py 2.1 KB
  • 📁 publishing/
    • 📄 __init__.py 2.2 KB
    • 📄 _metadata_extraction.py 4.8 KB
    • 📄 _metadata_reporting.py 6.4 KB
    • 📄 AGENTS.md 6.0 KB
    • 📄 announcement.py 2.1 KB
    • 📄 api.py 3.5 KB
    • 📄 checklist.py 3.0 KB
    • 📄 citations.py 5.0 KB
    • 📄 cli.py 9.1 KB
    • 📄 metadata.py 866 B
    • 📄 models.py 714 B
    • 📄 package.py 2.6 KB
    • 📄 platforms.py 6.9 KB
    • 📄 publish_cli.py 1.8 KB
    • 📄 readiness.py 3.3 KB
    • 📄 README.md 4.4 KB
    • 📄 SKILL.md 3.1 KB
  • 📁 rendering/
    • 📄 __init__.py 480 B
    • 📄 _pdf_combined_renderer.py 17.4 KB
    • 📄 _pdf_figure_paths.py 6.5 KB
    • 📄 _pdf_latex_bibliography.py 2.4 KB
    • 📄 _pdf_latex_helpers.py 8.4 KB
    • 📄 _pdf_latex_pipeline.py 8.7 KB
    • 📄 _pdf_latex_validation.py 3.2 KB
    • 📄 _pdf_markdown_combine.py 3.5 KB
    • 📄 _pdf_math_delimiters.py 5.3 KB
    • 📄 _pdf_pandoc_engine.py 9.2 KB
    • 📄 _pdf_preflight.py 2.8 KB
    • 📄 _pdf_tex_transforms.py 611 B
    • 📄 _pipeline_summary.py 9.1 KB
    • 📄 AGENTS.md 24.3 KB
    • 📄 cli.py 3.5 KB
    • 📄 config.py 2.7 KB
    • 📄 convert_latex_images.lua 8.8 KB
    • 📄 core.py 8.9 KB
    • 📄 ide_style.css 1.5 KB
    • 📄 latex_discovery.py 3.2 KB
    • 📄 latex_package_validator.py 1.3 KB
    • 📄 latex_utils.py 6.3 KB
    • 📄 latex_validation.py 6.4 KB
    • 📄 manuscript_discovery.py 5.8 KB
    • 📄 pdf_renderer.py 8.8 KB
    • 📄 pipeline.py 14.0 KB
    • 📄 poster_renderer.py 1.1 KB
    • 📄 README.md 27.3 KB
    • 📄 render_all_cli.py 929 B
    • 📄 SKILL.md 3.6 KB
    • 📄 slides_renderer.py 11.0 KB
    • 📄 web_renderer.py 11.3 KB
  • 📁 reporting/
    • 📄 __init__.py 3.4 KB
    • 📄 _csv_comparative.py 5.7 KB
    • 📄 _csv_project_breakdown.py 6.2 KB
    • 📄 _csv_tables.py 12.7 KB
    • 📄 _dashboard_charts.py 30.4 KB
    • 📄 _dashboard_constants.py 260 B
    • 📄 _dashboard_csv.py 1.2 KB
    • 📄 _dashboard_matplotlib.py 8.7 KB
    • 📄 _dashboard_specialized.py 48.1 KB
    • 📄 _executive_analysis.py 6.1 KB
    • 📄 _executive_collectors.py 11.0 KB
    • 📄 _executive_health.py 12.2 KB
    • 📄 _executive_models.py 2.7 KB
    • 📄 _executive_renderers.py 4.0 KB
    • 📄 _executive_report_formats.py 15.5 KB
    • 📄 AGENTS.md 32.8 KB
    • 📄 coverage_analysis.py 7.7 KB
    • 📄 coverage_json_parser.py 2.7 KB
    • 📄 coverage_parser.py 11.3 KB
    • 📄 coverage_reporter.py 1.0 KB
    • 📄 error_aggregator.py 11.4 KB
    • 📄 executive_reporter.py 1.9 KB
    • 📄 html_templates.py 4.9 KB
    • 📄 log_analysis.py 3.6 KB
    • 📄 manuscript_overview.py 5.0 KB
    • 📄 markdown_formatter.py 6.9 KB
    • 📄 multi_project_reporter.py 9.5 KB
    • 📄 output_organizer.py 10.1 KB
    • 📄 output_statistics.py 8.9 KB
    • 📄 page_grid.py 5.2 KB
    • 📄 page_rendering.py 7.2 KB
    • 📄 pipeline_html.py 5.2 KB
    • 📄 pipeline_io.py 8.2 KB
    • 📄 pipeline_markdown.py 4.1 KB
    • 📄 pipeline_report_model.py 4.2 KB
    • 📄 pipeline_test_runner.py 19.3 KB
    • 📄 pytest_output_parser.py 5.5 KB
    • 📄 README.md 11.4 KB
    • 📄 report_builder.py 5.9 KB
    • 📄 report_generator.py 4.8 KB
    • 📄 result_loaders.py 4.6 KB
    • 📄 SKILL.md 3.9 KB
    • 📄 suite_runner.py 9.7 KB
  • 📁 scientific/
    • 📄 __init__.py 2.0 KB
    • 📄 AGENTS.md 7.5 KB
    • 📄 benchmarking.py 6.7 KB
    • 📄 documentation.py 3.9 KB
    • 📄 README.md 3.7 KB
    • 📄 SKILL.md 2.8 KB
    • 📄 stability.py 3.1 KB
    • 📄 templates.py 10.1 KB
    • 📄 validation.py 9.9 KB
  • 📁 skills/
    • 📄 __init__.py 1.0 KB
    • 📄 __main__.py 188 B
    • 📄 AGENTS.md 1.9 KB
    • 📄 cli.py 3.4 KB
    • 📄 discovery.py 7.8 KB
    • 📄 README.md 575 B
    • 📄 SKILL.md 1.0 KB
  • 📁 steganography/
    • 📄 __init__.py 1.3 KB
    • 📄 AGENTS.md 1.7 KB
    • 📄 barcode_generators.py 3.9 KB
    • 📄 barcode_payload.py 4.0 KB
    • 📄 barcodes.py 7.5 KB
    • 📄 config.py 5.5 KB
    • 📄 core.py 16.1 KB
    • 📄 encryption.py 5.8 KB
    • 📄 hashing.py 2.9 KB
    • 📄 metadata.py 6.3 KB
    • 📄 overlays.py 10.2 KB
    • 📄 README.md 4.0 KB
    • 📄 SKILL.md 3.6 KB
  • 📁 validation/
    • 📁 cli/
      • 📄 __init__.py 105 B
      • 📄 __main__.py 183 B
      • 📄 AGENTS.md 432 B
      • 📄 main.py 7.0 KB
      • 📄 markdown.py 4.4 KB
      • 📄 pdf.py 5.4 KB
      • 📄 README.md 254 B
    • 📁 content/
      • 📄 __init__.py 688 B
      • 📄 AGENTS.md 431 B
      • 📄 figure_validator.py 3.6 KB
      • 📄 markdown_validator.py 14.2 KB
      • 📄 pdf_validator.py 9.6 KB
      • 📄 README.md 261 B
    • 📁 docs/
      • 📄 __init__.py 882 B
      • 📄 _docs_scan_report.py 4.1 KB
      • 📄 accuracy.py 14.9 KB
      • 📄 AGENTS.md 597 B
      • 📄 completeness.py 7.2 KB
      • 📄 discovery.py 15.8 KB
      • 📄 models.py 3.1 KB
      • 📄 quality.py 9.8 KB
      • 📄 README.md 360 B
      • 📄 scanner.py 11.4 KB
    • 📁 integrity/
      • 📄 __init__.py 1.8 KB
      • 📄 AGENTS.md 393 B
      • 📄 check_links.py 34.3 KB
      • 📄 checks.py 23.9 KB
      • 📄 link_validator.py 17.5 KB
      • 📄 README.md 259 B
    • 📁 output/
      • 📄 __init__.py 552 B
      • 📄 AGENTS.md 411 B
      • 📄 no_mock_enforcer.py 2.1 KB
      • 📄 pipeline.py 14.4 KB
      • 📄 README.md 235 B
      • 📄 validator.py 17.4 KB
    • 📁 repo/
      • 📄 __init__.py 846 B
      • 📄 _repo_ast.py 3.2 KB
      • 📄 _repo_documented_commands.py 3.4 KB
      • 📄 _repo_scan_report.py 2.4 KB
      • 📄 AGENTS.md 682 B
      • 📄 audit_orchestrator.py 15.5 KB
      • 📄 issue_categorizer.py 13.9 KB
      • 📄 known_exceptions.py 8.4 KB
      • 📄 models.py 793 B
      • 📄 README.md 436 B
      • 📄 scanner.py 19.6 KB
    • 📄 __init__.py 3.4 KB
    • 📄 AGENTS.md 39.5 KB
    • 📄 README.md 18.9 KB
    • 📄 SKILL.md 4.6 KB
  • 📄 __init__.py 2.4 KB
  • 📄 AGENTS.md 31.1 KB
  • 📄 PAI.md 2.1 KB
  • 📄 README.md 13.3 KB
  • 📄 SKILL.md 5.9 KB

SKILL.md

Login to download/like/favorite ❤ 13 | ★ 0
Comments 0

Please login before commenting.

Loading comments...